Book One
Contents
CLICK: A Clustering Algorithm with Applications to Gene Expression Analysis
PDFA Statistical Method for Finding Transcription Factor Binding Sites
PDFTowards a Complete Map of the Protein Space Based on a Unified Sequence and Structure Analysis of All Known Proteins
PDFBiclustering of Expression Data
PDFThe Conserved Exon Method for Gene Finding
PDFProtein Family Classification Using Sparse Markov Transducers
PDFSpectrum Alignment: Efficient Resequencing by Hybridization
PDFA Multiple Alignment Algorithm for Metabolic Pathway Analysis Using Enzyme Hierarchy
PDFIntegrative Analysis of Protein Interaction Data
PDFMatching Protein b-Sheet Partners by Feedforward and Recurrent Neural Networks
PDFAn Evaluation of Ontology Exchange Languages for Bioinformatics
PDFA Probabilistic Learning Approach to Whole-Genome Operon Prediction
PDFIndex
PDFGlimmers in the Midnight Zone: Characterization of Aligned Identical Residues in Sequence-Dissimilar Proteins Sharing a Common Fold
PDFAn Exact Algorithm to Identify Motifs in Orthologous Sequences from Multiple Species
PDFAnalysis of Yeast’s ORF Upstream Regions by Parallel Processing, Microarrays, and Computational Methods
PDFEfficient Attractor Analysis Based on Self-Dependent Subsets of Elements–An Application to Signal Transduction Studies
PDFAlignment of Flexible Protein Structures
PDFAnalysis of Gene Expression Microarrays for Phenotype Classification
PDFGenes, Themes, and Microarrays: Using Information Retrieval for Large-Scale Gene Analysis
PDFMining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data
PDFAnalysis of Gene Expression Data with Pathway Scores
PDFA New Fast Heuristic for Computing the Breakpoint Phylogeny and Experimental Phylogenetic Analyses of Real and Synthetic Data
PDFTowards a Systematics for Protein Subcellular Location: Quantitative Description of Protein Localization Patterns and Automated Analysis of Fluorescence Microscope Images
PDFRobust Parametric and Semi-Parametric Spot Fitting for Spot Array Images
PDFAccelerating Protein Classification Using Suffix Trees
PDFIntelligent Aids for Parallel Experiment Planning and Macromolecular Crystallization
PDFLinear Modeling of Genetic Networks from Experimental Data
PDFGenomic Fold Assignment and Rational Modeling of Proteins of Biological Interest
PDFUTR Reconstruction and Analysis Using Genomically Aligned EST Sequences
PDFA Practical Algorithm for Optimal Inference of Haplotypes from Diploid Populations
PDFSmall Subunit Ribosomal RNA Modeling Using Stochastic Context-Free Grammars
PDFReducing Mass Degeneracy in SAR by MS by Stable Isotopic Labeling
PDFPrediction of the Number of Residue Contacts in Proteins
PDFSearch for a New Description of Protein Topology and Local Structure
PDFCombinatorial Approaches to Finding Subtle Signals in DNA Sequences
PDFPreface
PDFComputation and Visualization of Degenerate Repeats in Complete Genomes
PDFA Pragmatic Information Extraction Strategy for Gathering Data on Genetic Interactions
PDFPattern Recognition of Genomic Features with Microarrays: Site Typing of Mycobacterium tuberculosis Strains
PDFSequence Database Search Using Jumping Alignments
PDFRegulatory Element Detection Using a Probabilistic Segmentation Model
PDFFinding Regulatory Elements Using Joint Likelihoods for Sequence and Expression Profile Data
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