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Home / Proceedings / Proceedings Of The Seventh International Conference On Intelligent Systems For Molecular Biology /

Book One

Contents

  • Fidelity Probes for DNA Arrays

    Earl Hubbell and Pavel A. Pevzner

    PDF
  • Solving Large Scale Phylogenetic Problems using DCM2

    Daniel H. Huson, Lisa Vawter, and Tandy J. Warnow

    PDF
  • Database Screening for HIV Protease Ligands: The Influence of Binding-Site Conformation and Representation on Ligand Selectivity

    Volker Schnecke and Leslie A. Kuhn

    PDF
  • An Algorithm Combining Discrete and Continuous Methods for Optical Mapping

    R. M. Karp, I. Pe'er, and R. Shamir

    PDF
  • Reconstructing the Duplication History of a Tandem Repeat

    Gary Benson and Lan Dong

    PDF
  • INTERACT: An Object Oriented Protein-Protein Interaction Database

    Karen Eilbeck, Andy Brass, Norman Paton, and Charlie Hodgman

    PDF
  • A Dataset Generator for Whole Genome Shotgun Sequencing

    Gene Myers

    PDF
  • Spatio-Temporal Registration of the Expression Patterns of Drosophila Segmentation Genes

    Ekaterina M. Myasnikova, David Kosman, John Reinitz, and Maria G. Samsonova

    PDF
  • Constructing Biological Knowledge Bases by Extracting Information from Text Sources

    Mark Craven and Johan Kumlien

    PDF
  • Invited Talks

    Amos Bairoch, Manfred Eigen, Richard M. Karp, Anthony R. Kerlavage, Eugene V. Koonin, Robert J. Lipshutz, Matthias Mann, Michael J. E. Sternberg, Paul A. Bates, Lawrence A. Kelley, Robert M. MacCallum, Arne Muller, Stephen Muggleton, Marcel Turcotte,

    PDF
  • Pharmaceutical Target Discovery Using Guilt-by-Association: Schizophrenia and Parkinson’s Disease Genes

    Michael G. Walker, Wayne Volkmuth, and Tod M. Klingler

    PDF
  • Identity by Descent Genome Segmentation Based on Single Nucleotide Polymorphism Distributions

    Thomas W. Blackwell, Eric Rouchka, and David J. States

    PDF
  • Preface

    Thomas Lengauer, Reinhard Schneider, Peer Bork, Douglas Brutlag, Janice Glasgow, Hans -Werner Mewes, Ralf Zimmer

    PDF
  • ESTScan: A Program for Detecting, Evaluating, and Reconstructing Potential Coding Regions in EST Sequences

    Christian Iseli, C. Victor Jongeneel, and Philipp Bucher

    PDF
  • Database Search Based on Bayesian Alignment

    Jun Zhu, Roland Lüthy, and Charles E. Lawrence

    PDF
  • A Data Base of Minimally Frustrated Alpha-Helical Segments Extracted from Proteins According to an Entropy Criterion

    Rita Casadio, Mario Compiani, Piero Fariselli, and Pier Luigi Martelli

    PDF
  • Building Dictionaries of 1D and 3D Motifs by Mining the Unaligned 1D Sequences of 17 Archaeal and Bacterial Genomes

    Isidore Rigoutsos, Yuan Gao, Aris Floratos, and Laxmi Parida

    PDF
  • Metrics and Similarity Measures for Hidden Markov Models

    Rune Lyngsø, Christian N. S. Pedersen, and Henrik Nielsen

    PDF
  • Using the Fisher Kernel Method to Detect Remote Protein Homologies

    Tommi Jaakkola, Mark Diekhans, and David Haussler

    PDF
  • Crystallographic Threading

    A. Ableson and J. I. Glasgow

    PDF
  • Seamless Integration of Biological Applications within a Database Framework

    Thodoros Topaloglou, Anthony Kosky, and Victor Markowitz

    PDF
  • Nearest Neighbor Classification in 3D Protein Databases

    Mihael Ankerst, Gabi Kastenmüller, Hans-Peter Kriegel, and Thomas Seidl

    PDF
  • Quantitative, Scalable Discrete-Event Simulation of Metabolic Pathways

    Peter A. Meric and Michael J. Wise

    PDF
  • ISMB Sponsors

    Thomas Lengauer, Reinhard Schneider, Peer Bork, Douglas Brutlad, Janice Glasgow, Hans-Werner Mewes, and Ralf Zimmer

    PDF
  • ISMB Organization

    Thomas Lengauer, Reinhard Schneider, Peer Bork, Douglas Brutlad, Janice Glasgow, Hans-Werner Mewes, and Ralf Zimmer

    PDF
  • A Linear Time Algorithm for Finding All Maximal Scoring Subsequences

    Walter L. Ruzzo and Martin Tompa

    PDF
  • A Phylogenetic Approach to RNA Structure Prediction

    Viatcheslav R. Akmaev, Scott T. Kelley, and Gary D. Stormo

    PDF
  • Analysis of Ribosomal RNA Sequences by Combinatorial Clustering

    Poe Xing, Casimir Kulikowski, Ilya Muchnik, Inna Dubchak, Denise M. Wolf, Sylvia Spengler, and Manfred Zorn

    PDF
  • Automatic Extraction of Biological Information from Scientific Text: Protein-Protein Interactions

    Christian Blaschke, Miguel A. Andrade, Christos Ouzounis, and Alfonso Valencia

    PDF
  • Position-Specific Annotation of Protein Function Based on Multiple Homologs

    Miguel A. Andrade

    PDF
  • Protein Fold Class Prediction: New Methods of Statistical Classification

    Janet Grassmann, Martin Reczko, Sandor Suhai, and Lutz Edler

    PDF
  • An Exact Method for Finding Short Motifs in Sequences, with Application to the Ribosome Binding Site Problem

    Martin Tompa

    PDF
  • TEXTAL: A Pattern Recognition System for Interpreting Electron Density Maps

    Thomas R. Ioerger, Thomas Holton, Jon A. Christopher, and James C. Sacchettini

    PDF
  • Genomics via Optical Mapping III: Contiging Genomic DNA

    Thomas Anantharaman, Bud Mishra, and David Schwartz

    PDF
  • Using Sequence Motifs for Enhanced Neural Network Prediction of Protein Distance Constraints

    Jan Gorodkin, Ole Lund, Claus A. Andersen, and Søren Brunak

    PDF
  • A Motion Planning Approach to Flexible Ligand Binding

    Amit P. Singh, Jean-Claude Latombe, and Douglas L. Brutlag

    PDF
  • Multiple Structural Alignment and Core Detection by Geometric Hashing

    Nathaniel Leibowitz, Zipora Y. Fligelman, Ruth Nussinov, and Haim J. Wolfson

    PDF
  • Rapid Assessment of Extremal Statistics for Gapped Local Alignment

    Rolf Olsen, Ralf Bundschuh, and Terence Hwa

    PDF
  • Index

    David Hamilton

    PDF

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