• Skip to main content
  • Skip to primary sidebar
AAAI

AAAI

Association for the Advancement of Artificial Intelligence

    • AAAI

      AAAI

      Association for the Advancement of Artificial Intelligence

  • About AAAIAbout AAAI
    • AAAI Officers and Committees
    • AAAI Staff
    • Bylaws of AAAI
    • AAAI Awards
      • Fellows Program
      • Classic Paper Award
      • Dissertation Award
      • Distinguished Service Award
      • Allen Newell Award
      • Outstanding Paper Award
      • Award for Artificial Intelligence for the Benefit of Humanity
      • Feigenbaum Prize
      • Patrick Henry Winston Outstanding Educator Award
      • Engelmore Award
      • AAAI ISEF Awards
      • Senior Member Status
      • Conference Awards
    • AAAI Resources
    • AAAI Mailing Lists
    • Past AAAI Presidential Addresses
    • Presidential Panel on Long-Term AI Futures
    • Past AAAI Policy Reports
      • A Report to ARPA on Twenty-First Century Intelligent Systems
      • The Role of Intelligent Systems in the National Information Infrastructure
    • AAAI Logos
    • News
  • aaai-icon_ethics-diversity-line-yellowEthics & Diversity
  • Conference talk bubbleConferences & Symposia
    • AAAI Conference
    • AIES AAAI/ACM
    • AIIDE
    • IAAI
    • ICWSM
    • HCOMP
    • Spring Symposia
    • Summer Symposia
    • Fall Symposia
    • Code of Conduct for Conferences and Events
  • PublicationsPublications
    • AAAI Press
    • AI Magazine
    • Conference Proceedings
    • AAAI Publication Policies & Guidelines
    • Request to Reproduce Copyrighted Materials
  • aaai-icon_ai-magazine-line-yellowAI Magazine
    • Issues and Articles
    • Author Guidelines
    • Editorial Focus
  • MembershipMembership
    • Member Login
    • Developing Country List
    • AAAI Chapter Program

  • Career CenterCareer Center
  • aaai-icon_ai-topics-line-yellowAITopics
  • aaai-icon_contact-line-yellowContact

Home / Proceedings / Proceedings Of The Fourth International Conference On Intelligent Systems For Molecular Biology /

Book One

Contents

  • A Sequence Similarity Search Algorithm Based on a Probabilistic Interpretation of an Alignment Scoring System

    Philipp Bucher and Kay Hofmann

    PDF
  • The Mathematical Model of Subtractive Hybridization and Its Practical Application

    Olga D. Ermolaeva, Sergy A. Lukyanov, and Eugene D. Sverdlov

    PDF
  • Improving the Quality of Automatic DNA Sequence Assembly Using Fluorescent Trace-Data Classifications

    Carolyn F. Allex, Schuyler F. Baldwin, Jude W. Shavlik, and Frederick R. Blattner

    PDF
  • Genome-Scale DNA Sequence Recognition by Hybridization to Short Oligomers

    Aleksandar Milosavljevic, Suzana Savkovic, Radomir Crkvenjakov, David Salbego, Hope Serrato, Heidi Kreuzer, Anne Gemmell, Shawna Batus, Danica Grujic, Susan Carnahan, and Jovanka Tepavcevic

    PDF
  • A Generalized Hidden Markov Model for the Recognition of Human Genes in DNA

    David Kulp, David Haussler, Martin G. Reese, and Frank H. Eeckman

    PDF
  • Inferring Relatedness of a Macromolecule to a Sequence Database Without Sequencing

    Jin Kim, James R. Cole, Eric Torng, and Sakti Pramanik

    PDF
  • Prediction

    Shankar Subramaniam, David K. Tcheng, and James M. Fenton

    PDF
  • The Megaprior Heuristic for Discovering Protein Sequence Patterns

    Timothy L. Bailey and Michael Gribskov

    PDF
  • A Top-Down Approach to Whole Genome Visualization

    K. Heumann, C. Harris, and H. W. Mewes

    PDF
  • Using Iterative Dynamic Programming to Obtain Accurate Pairwise and Multiple Alignments of Protein Structures

    Mark Gerstein and Michael Levitt

    PDF
  • A Probabilistic Classification System for Predicting the Cellular Localization Sites of Proteins

    Paul Horton and Kenta Nakai

    PDF
  • GeneFisher–Software Support for the Detection of Postulated Genes

    Robert Giegerich, Folker Meyer, and Chris Schleiermacher

    PDF
  • A Grammar-Based Unification of Several Alignment and Folding Algorithms

    Fabrice Lefebvre

    PDF
  • From Electron Density and Sequence to Structure: Integrating Protein Image Analysis and Threading for Structure Determination

    Kim Baxter, Evan Steeg, Richard Lathrop, Janice Glasgow, and Suzanne Fortier

    PDF
  • Discovering Empirically Conserved Amino Acid Substitution Groups in Databases of Protein Families

    Thomas D. Wu and Douglas L. Brutlag

    PDF
  • Characterization of Prokaryotic and Eukaryotic Promoters Using Hidden Markov Models

    Anders Gorm Pedersen, Pierre Baldi, Soren Brunak, and Yves Chauvan

    PDF
  • HinCyc: A Knowledge Base of the Complete Genome and Metabolic Pathways of H. influenzae

    Peter D. Karp, Christos Ouzounis, and Suzanne Paley

    PDF
  • Gene Prediction by Pattern Recognition and Homology Search

    Ying Xu and Edward C. Uberbacher

    PDF
  • Preface

    David J. States, Pankaj Agarwal, Terry Gaasterland, Lawrence Hunter, and Randall F. Smith

    PDF
  • Finding Genes in DNA Using Decision Trees and Dynamic Programming

    Steven Salzberg, Xin Chen, John Henderson, and Kenneth Fasman

    PDF
  • Gene Recognition in Cyanobacterium Genomic Sequence Data Using the Hidden Markov Model

    Tetsushi Yada and Makoto Hirosawa

    PDF
  • Compact Encoding Strategies for DNA Sequence Similarity Search

    David J. States and Pankaj Agarwal

    PDF
  • Good Maps Are Straight

    Eric Harley, Anthony J. Bonner, and Nathan Goodman

    PDF
  • Applications of GeneMark in Multispecies Environments

    James D. McIninch, William S. Hayes, and Mark Borodovsky

    PDF
  • Refining Neural Network Predictions for Helical Transmembrane Proteins by Dynamic Programming

    Burkhard Rost, Rita Casadio, and Piero Fariselli

    PDF
  • Ontological Foundations for Biology Knowledge Models

    Carole D. Hafner and Natalya Fridman

    PDF
  • Discovering Patterns and Subfamilies in Biosequences

    Alvis Brazma, Inge Jonassen, Esko Ukkonen, and Jaak Vilo

    PDF
  • Parameterization Studies for the SAM and HMMER Methods of Hidden Markov Model Generation

    Marcella A. McClure, Chris Smith, and Pete Elton

    PDF

Primary Sidebar