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Home / Proceedings / Proceedings of the Twentieth International Conference on Machine Learning, 1995 /

Book One

Contents

  • Parallel Sequence Alignment in Limited Space

    J Alicia Grice, Richard Hughey, and Don Speck

    PDF
  • Identification of Protein Motifs Using Conserved Amino Acid Properties and Partitioning Techniques

    Thomas D. Wu and Douglas L. Brutlag

    PDF
  • Investigations of Escherichia coli Promoter Sequences with Artificial Neural Networks: New Signals Discovered Upstream of the Transcriptional Startpoint

    Anders Gorm Pedersen and Jacob Engelbrecht

    PDF
  • 3-D Lookup: Fast Protein Structure Database Searches at 90 % Reliability

    Liisa Holm and Chris Sander

    PDF
  • Recursive Dynamic Programming for Adaptive Sequence and Structure Alignment

    Ralf Thiele, Ralf Zimmer, and Thomas Lengauer

    PDF
  • Subclass Approach for Mutational Spectrum Analysis

    Igor Rogozin, Galina Glasko, and Evgeniy Latkin

    PDF
  • Classifying Nucleic Acid Sub-Sequences as Introns or Exons Using Genetic Programming

    Simon Handley

    PDF
  • Evaluating Regularizers for Estimating Distributions of Amino Acids

    Kevin Karplus

    PDF
  • Using Temporal Reasoning for Genome Map Assembly

    Olivier Schmeltzer

    PDF
  • Neural Net Representations of Empirical Protein Potentials

    Tal Grossman, Rob Farber, and Alan Lapedes

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  • Viewing Genome Data as Objects for Application Development

    Ellen R. Bergeman, Mark Graves, and Charles B. Lawrence

    PDF
  • Time-Efficient Docking of Flexible Ligands into Active Sites of Proteins

    Matthias Rarey, Bernd Kramer, and Thomas Lengauer

    PDF
  • Protein Modeling with Hybrid Hidden Markov Model/Neural Network Architectures

    Pierre Baldi and Yves Chauvin

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  • Predicting Free Energy Contribution to the Conformational Stability of Folded Proteins From the Residue Sequence with Radial Basis Function Networks

    Rita Casadio, Mario Compiani , Piero Fariselli and Francesco Vivarelli

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  • ISMB 1995 Organizing and Program Committee

    Christopher Rawlings, Dominic Clark, Russ Altman, Lawrence Hunter, Thomas Lengauer, and Shoshana Wodak

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  • MMDB: An ASN.1 Specification for Macromolecular Structure

    Hitomi Ohkawa, James Ostell, and Stephen Bryant

    PDF
  • Neweyes: A System for Comparing Biological Sequences Using the Running Karp-Rabin Greedy String-Tiling Algorithm

    Michael J. Wise

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  • Periodic Sequence Patterns in Human Exons

    Pierre Baldi, Sören Brunak, Yves Chauvin, Jacob Engelbrecht, and Anders Krogh

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  • Predicting Protein Folding Classes without Overly Relying on Homology

    Mark W. Craven, Richard J. Mural, Loren J. Hauser, and Edward C. Uberbacher

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  • TOPITS: Threading One-Dimensional Predictions Into Three-Dimensional Structures

    Burkhard Rost

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  • Constituting a Receptor-Ligand Information Base from Quality-Enriched Data

    Klemens Hemm, Karl Aberer, and Manfred Hendlich

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  • Recognising Promoter Sequences Using An Artificial Immune System

    Denise E. Cooke and John E. Hunt

    PDF
  • The Value of Prior Knowledge in Discovering Motifs with MEME

    Timothy L. Bailey and Charles Elkan

    PDF
  • Relation Between Protein Structure, Sequence Homology and Composition of Amino Acids

    Eddy Mayoraz, Inna Dubchak, and Ilya Muchnik

    PDF
  • Automata–Theoretic Models of Mutation and Alignment

    David B. Searls and Kevin P. Murphy

    PDF
  • APIC: A Generic Interface for Sequencing Projects

    Gilles Bisson and Alain Garreau

    PDF
  • DNA Sequence Assembly and Genetic Algorithms — New Results and Puzzling Insights

    Rebecca Parsons and Mark E. Johnson

    PDF
  • Sponsoring Organization

    Christopher Rawlings, Dominic Clark, Russ Altman, Lawrence Hunter, Thomas Lengauer, and Shoshana Wodak

    PDF
  • Protein Docking: Combining Symbolic Descriptions of Molecular Surfaces and Grid-Based Scoring Functions

    Friedrich Ackermann, Grit Herrmann, Franz Kummert, Stefan Posch, Gerhard Sagerer, and Dietmar Schomburg

    PDF
  • A Constraint-Based Assignment System for Automating Long Side Chain Assignments in Protein 2D NMR Spectra

    Scott Leishman, Peter M. D. Gray, and John E. Fothergill

    PDF
  • Symbolic Generation and Clustering of RNA 3-D Motifs

    Marielle Foucrault and Francois Major

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  • Characterizing Oriented Protein Structural Sites Using Biochemical Properties

    Steven Bagley, Liping Wei,Carol Cheng, and Russ Altman

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  • Multiple Alignment Using Hidden Markov Models

    Sean R. Eddy

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  • Softening Constraints in Constraint-Based Protein Topology Prediction.

    Simon Parsons

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  • Cooperative Computer System For Genome Sequence Analysis

    Claudine Medigue, T. Vermat, G. Bisson, A. Viari, and A. Danchin

    PDF
  • A Divide and Conquer Approach to Multiple Alignment

    Andreas Dress, Sören Perrey, and Georg Füllen

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  • BONSAI Garden: Parallel Knowledge Discovery System for Amino Acid Sequences

    Takayoshi Shoudai, Michael Lappe, Satoru Miyano, Ayumi Shinohara, Takeo Okazaki, Setsuo Arikawa, Tomoyuki Uchida, Shinichi Shimozono, Takeshi Shinohara, and Satoru Kuhara

    PDF
  • An Optimized Parsing Algorithm Well Suited to RNA Folding

    Fabrice Lefebvre

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  • Preface

    Christopher Rawlings, Dominic Clark, Russ Altman, Lawrence Hunter, Thomas Lengauer, and Shoshana Wodak

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  • Identification of Human Gene Structure Using Linear Discriminant Functions and Dynamic Programming

    Victor A. Solovyev, Asaf A. Salamov, and Charles B. Lawrence

    PDF
  • Maximum Entropy Weighting of Aligned Sequences of Proteins or DNA

    Anders Krogh and Graeme Mitchison

    PDF
  • A Distance-Based Block Searching Algorithm

    Marie-France Sagot, Alain Viari, and Henri Soldano

    PDF
  • Graph-Theoretic Approach to RNA Modeling Using Comparative Data

    Robert Cary and Gary Stormo

    PDF
  • Towards an Intelligent System for the Automatic Assignment of Domains in Globular Proteins

    Michael J. E. Sternberg, Hedvig Hegyi, Suhail A. Islam, Jingchu Luo, and Robert B, Russell

    PDF
  • Automatic RNA Secondary Structure Determination with Stochastic Context-Free Grammars

    Leslie Grate

    PDF
  • Solvent Accessible Surface Representation in a Database System for Protein Docking

    Thomas Seidl and Hans-Peter Kriegel

    PDF
  • Index

    David Hamilton

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  • A Specification for Defining and Annotating Regions of Macromolecular Structures

    Steven E. Brenner and Tim J. P. Hubbard

    PDF
  • Identification of DNA Sequences by Specific Oligonucleotide Sets–A Computer Tool and Application

    N. A. Kolchanov, O. V. Vishnevsky, V. N. Babenko, A. E. Kel, and I. N. Shindyalov

    PDF
  • A New Approach to Primer Selection in Polymerase Chain Reaction Experiments

    William R. Pearson, Gabriel Robins, Dallas E. Wrege and Tongtong Zhang

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  • Computer Tool FUNSITE for Analysis of Eukaryotic Regulatory Genomic Sequences

    Alexander Kel, Y. V. Kondrakhin , P. A. Kolpakov, O. V. Kel, A. G. Romashenko, E. Wingender, L. Milanesi, and N. A. Kolchanov

    PDF
  • Reconstruction of Metabolic Networks Using Incomplete Information

    Terry Gaasterland and Evgeni Selkov

    PDF

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