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Home / Proceedings / Proceedings Of The Second International Conference On Intelligent Systems For Molecular Biology /

Book One

Contents

  • Stochastic Motif Extraction Using Hidden Markov Model

    Yukiko Fujiwara, Minoru Asogawa, and Akihiko Konagaya

    PDF
  • An Expert System for Processing Sequence Homology Data

    Erik L. L. Sonnhammer and Richard Durbin

    PDF
  • Distributed Machine Learning: Scaling Up with Coarse-grained Parallelism

    Foster John Provost and Daniel N. Hennessy

    PDF
  • Finding an Average Core Structure: Application to the Globins

    Russ B. Altman and Mark Gerstein

    PDF
  • Assigning Function to CDS Through Qualified Query Answering: Beyond Alignment and Motifs

    Terry Gaasterland, Natalia Maltsev, Jorge Logo, and Guo-Hua Chen

    PDF
  • Discovering Side-Chain Correlations In [[alpha]]-Helices

    Tod M. Klinger and Douglas L. Brutlag

    PDF
  • Flow Cytometry Data Analysis: Comparing Large Multivariate Data Sets Using Classification Trees

    Joseph Norman

    PDF
  • Knowledge Discovery of Multilevel Protein Motifs

    Darrell Conklin, Suzanne Fortier, and Janice Glasgow

    PDF
  • Representations of Metabolic Knowledge: Pathways

    Peter D. Karp and Suzanne M. Paley

    PDF
  • A Flexible Approach to Genome Map Assembly

    Eric Harley and Anthony J. Bonner

    PDF
  • Optimally Parsing a Sequence into Different Classes Based on Multiple Types of Evidence

    Gary D. Stormo and David Haussler

    PDF
  • Integration of Competing Ancillary Assertions in Genome Assembly

    Christian Burks, Rebecca J. Parsons, and Michael L. Engle

    PDF
  • High Speed Pattern Matching in Genetic Data Base with Reconfigurable Hardware

    Eric Lemoine, Joel Quinqueton and Jean Sallantin

    PDF
  • DNA Sequence Analysis Using Hierarchical ART-based Classification Network

    Cathie LeBlanc, Charles R. Katholi, Thomas R. Unnasch, and Susan I. Hruska

    PDF
  • An Intelligent System for Comparing Protein Structures

    Ethan Benatan

    PDF
  • Induction of Rules for Biological Macromolecular Crystallization

    Daniel Hennessy, Vanathi Gopalakrishnan, Bruce G. Buchanan, John M. Rosenberg, and Devika Subramanian

    PDF
  • Kinematic Manipulation of Molecular Chains Subject to Rigid Constraint

    Dinesh Manocha and Yunsha Zhu

    PDF
  • A Restriction Mapping Engine Using Constraint Logic Programming

    Trevor I. Dix and Chut N. Yee

    PDF
  • Inductive Logic Programming Used to Discover Topological Constraints in Protein Structures

    Ross D. King, Dominic A. Clark, Jack Shirazi, and Michael J. E. Sternberg

    PDF
  • Constraint Satisfaction Techniques for Modeling Large Complexes: Application to the Central Domain of 16S Ribosomal RNA

    Russ B. Altman, Bryn Weiser, and Harry F. Noller

    PDF
  • The Prediction of the Degree of Exposure to Solvent of Amino Acid Residues Via Genetic Programming

    Simon Handley

    PDF
  • Intelligent DNA-Based Molecular Diagnostics Using Linked Genetic Markers

    Dhiraj K. Pathak, Eric P. Hoffman, and Mark W. Perlin

    PDF
  • Toward Unification of Taxonomy Databases in a Distributed Environment

    Hajime Kitakami, Yoshio Tateno, and Takashi Gojobori

    PDF
  • VQLM: A Visual Query Language for Macromolecular Structural Databases

    Dawn Cohen, Kumar Vadaparty, Bill Dickinson and Hemanth Salem

    PDF
  • Protein Design by Optimization of a Sequence-Structure Quality Function

    Steven E. Brenner and Alan Berry

    PDF
  • Describing Multiple Levels of Abstraction in the Metabolism

    Michael L. Mavrovouniotis

    PDF
  • Aligning Genomes with Inversions and Swaps

    J. L. Holloway and P. Cull

    PDF
  • Neural Networks for Determining Protein Specificity and Multiple Alignment of Binding Sites

    John M. Heumann, Alan S. Lapedes, and Gary D. Stormo

    PDF
  • Sequence Comparisons via Algorithmic Mutual Information

    Aleksandar Milosavljevic

    PDF
  • Genetic Map Construction with Constraints

    Dominic A. Clark, Christopher J. Rawlings, and Sylvie Doursenot

    PDF
  • Segmentation and Interpretation of 3D Protein Images

    Laurence Leherte, Kim Baxter, Janice Glasgow, and Suzanne Fortier

    PDF
  • A Generalized Profile Syntax for Biomolecular Sequence Motifs and Its Function in Automatic Sequence Interpretation

    Philipp Bucher and Amos Bairoch

    PDF
  • Geometric Problems in Molecular Biology and Robotics

    David Parsons and John Canny

    PDF
  • RNA Modeling Using Gibbs Sampling and Stochastic Context Free Grammars

    Leslie Grate, Mark Herbster, Richard Hughey, David Haussler, I. Saira Mian, and Harry Noller

    PDF
  • GeneQuiz: A Workbench for Sequence Analysis

    Michael Scharf, Reinheard Schneider, Georg Casari, Peer Bork, Alfonso Valencia, Christos Ouzounis, and Chris Sander

    PDF
  • Fitting a Mixture Model By Expectation Maximization To Discover Motifs In Biopolymer

    Timothy L. Bailey and Charles Elkan

    PDF
  • An Improved System for Exon Recognition and Gene Modeling in Human DNA Sequence

    Yin Xu, J. Ralph Einstein, Richard J. Mural, Manesh Shah, and Edward C. Uberbacher

    PDF
  • Using Interval Logic for Order Assembly

    Zhan Cui

    PDF
  • Evolution of a Computer Program for Classifying Protein Segments as Transmembrane Domains Using Genetic Programming

    John R. Koza

    PDF
  • Predicting Location and Structure Of [[beta]]-Sheet Regions Using Stochastic Tree Grammars

    Hiroshi Mamitsuka and Naoki Abe

    PDF
  • Preface

    Russ Altman, Douglas Brutlag, Peter Karp, Richard Lathrop, and David Searls

    PDF
  • Design and Application of a C++ Macromolecular Class Library

    Weider Chang, Ilya N. Shindyalov, Calton Pu, and Philip E. Bourne

    PDF
  • An Efficient Method for Multiple Sequence Alignment

    Jin Kim and Sakti Pramanik

    PDF
  • The Multi-Scale 3D-1D Compatibility Scoring for Inverse Protein Folding Protein

    Kentaro Onizuka, Masayuki Akahosi, Masato Ishikawa, and Kiyoshi Asai

    PDF
  • Prototyping a Genetics Deductive Database

    Catherine Hearne, Zhan Cui, Simon Parsons, and Saki Hajnal

    PDF
  • Creating a Knowledge Base of Biological Research Papers

    Carole D. Hafner, Kenneth Baclawski, Robert P. Futrelle, Natalya Fridman, and Shobana Sampath

    PDF
  • The Prediction of Human Exons By Oligonucleotide Composition and Disriminant Analysis of Spliceable Open Reading Frames

    Victor V. Solovyev, Asaf A. Salamov, and Charles B. Lawrence

    PDF
  • The Repeat Pattern Toolkit (RPT): Analyzing the Structure and Evolution of the C. elegans Genome

    Pankaj Agarwal and David J. States

    PDF

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