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Home / Proceedings / Proceedings of the AAAI Conference on Artificial Intelligence, 36 / No. 2: AAAI-22 Technical Tracks 2

Explainable Survival Analysis with Convolution-Involved Vision Transformer

February 1, 2023

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Authors

Yifan Shen

Beijing University of Posts and Telecommunications


Li Liu

National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100021, China


Zhihao Tang

Beijing University of Posts and Telecommunications


Zongyi Chen

Beijing University of Posts and Telecommunications


Guixiang Ma

University of Illinois at Chicago


Jiyan Dong

National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100021, China


Xi Zhang

Beijing University of Posts and Telecommunications


Lin Yang

National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100021, China


Qingfeng Zheng

National Cancer Center/ National Clinical Research Center for Cancer/ Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100021, China


DOI:

10.1609/aaai.v36i2.20118


Abstract:

Image-based survival prediction models can facilitate doctors in diagnosing and treating cancer patients. With the advance of digital pathology technologies, the big whole slide images (WSIs) provide increasing resolution and more details for diagnosis. However, the gigabyte-size WSIs would make most models computationally infeasible. To this end, instead of using the complete WSIs, most of existing models only use a pre-selected subset of key patches or patch clusters as input, which might fail to completely capture the patient's tumor morphology. In this work, we aim to develop a novel survival analysis model to fully utilize the complete WSI information. We show that the use of a Vision Transformer (ViT) backbone, together with convolution operations involved in it, is an effective framework to improve the prediction performance. Additionally, we present a post-hoc explainable method to identify the most salient patches and distinct morphology features, making the model more faithful and the results easier to comprehend by human users. Evaluations on two large cancer datasets show that our proposed model is more effective and has better interpretability for survival prediction.

Topics: AAAI

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HOW TO CITE:

Yifan Shen||Li Liu||Zhihao Tang||Zongyi Chen||Guixiang Ma||Jiyan Dong||Xi Zhang||Lin Yang||Qingfeng Zheng Explainable Survival Analysis with Convolution-Involved Vision Transformer Proceedings of the AAAI Conference on Artificial Intelligence (2022) 2207-2215.

Yifan Shen||Li Liu||Zhihao Tang||Zongyi Chen||Guixiang Ma||Jiyan Dong||Xi Zhang||Lin Yang||Qingfeng Zheng Explainable Survival Analysis with Convolution-Involved Vision Transformer AAAI 2022, 2207-2215.

Yifan Shen||Li Liu||Zhihao Tang||Zongyi Chen||Guixiang Ma||Jiyan Dong||Xi Zhang||Lin Yang||Qingfeng Zheng (2022). Explainable Survival Analysis with Convolution-Involved Vision Transformer. Proceedings of the AAAI Conference on Artificial Intelligence, 2207-2215.

Yifan Shen||Li Liu||Zhihao Tang||Zongyi Chen||Guixiang Ma||Jiyan Dong||Xi Zhang||Lin Yang||Qingfeng Zheng. Explainable Survival Analysis with Convolution-Involved Vision Transformer. Proceedings of the AAAI Conference on Artificial Intelligence 2022 p.2207-2215.

Yifan Shen||Li Liu||Zhihao Tang||Zongyi Chen||Guixiang Ma||Jiyan Dong||Xi Zhang||Lin Yang||Qingfeng Zheng. 2022. Explainable Survival Analysis with Convolution-Involved Vision Transformer. "Proceedings of the AAAI Conference on Artificial Intelligence". 2207-2215.

Yifan Shen||Li Liu||Zhihao Tang||Zongyi Chen||Guixiang Ma||Jiyan Dong||Xi Zhang||Lin Yang||Qingfeng Zheng. (2022) "Explainable Survival Analysis with Convolution-Involved Vision Transformer", Proceedings of the AAAI Conference on Artificial Intelligence, p.2207-2215

Yifan Shen||Li Liu||Zhihao Tang||Zongyi Chen||Guixiang Ma||Jiyan Dong||Xi Zhang||Lin Yang||Qingfeng Zheng, "Explainable Survival Analysis with Convolution-Involved Vision Transformer", AAAI, p.2207-2215, 2022.

Yifan Shen||Li Liu||Zhihao Tang||Zongyi Chen||Guixiang Ma||Jiyan Dong||Xi Zhang||Lin Yang||Qingfeng Zheng. "Explainable Survival Analysis with Convolution-Involved Vision Transformer". Proceedings of the AAAI Conference on Artificial Intelligence, 2022, p.2207-2215.

Yifan Shen||Li Liu||Zhihao Tang||Zongyi Chen||Guixiang Ma||Jiyan Dong||Xi Zhang||Lin Yang||Qingfeng Zheng. "Explainable Survival Analysis with Convolution-Involved Vision Transformer". Proceedings of the AAAI Conference on Artificial Intelligence, (2022): 2207-2215.

Yifan Shen||Li Liu||Zhihao Tang||Zongyi Chen||Guixiang Ma||Jiyan Dong||Xi Zhang||Lin Yang||Qingfeng Zheng. Explainable Survival Analysis with Convolution-Involved Vision Transformer. AAAI[Internet]. 2022[cited 2023]; 2207-2215.


ISSN: 2374-3468


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